Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_004113: Thermosynechococcus elongatus BP-1, complete genome

NCBI: NC_004113

Host Lineage: Thermosynechococcus elongatus; Thermosynechococcus; ; Chroococcales; Cyanobacteria; Bacteria

General Information: This is a uniquely thermophilic unicellular cyanobacteria that was isolated from Beppu hot spring in Japan. It is obligately photoautotrophic. Thermosynechococcus elongatus is a thermophilic cyanobacterium. This organism is readily transformable making it useful for molecular analyses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135005937119121133Island text1.6076234.121439.8561Neighbours118BLASTN350059.gbk
21026886*105110124216Island text1.4888330.143526.7755Neighbours118BLASTN+IslandViewer 1026886.gbk
31137754116109023337Island text1.3434227.946.0714Neighbours118BLASTN+IslandViewer 1137754.gbk
41234048*126028626239Island text1.9577837.571231.4302Neighbours118BLASTN+1234048.gbk