Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003919: Xanthomonas axonopodis pv. citri str. 306, complete genome

NCBI: NC_003919

Host Lineage: Xanthomonas citri; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This organism is the causal agent of citrus canker, a bacterial infection originating from southeast Asia which now occurs worldwide. Primarily a pathogen of plants in the Citrus genus, the disease is sometimes also found in other members of the Rutaceae. The bacterium survives in leaf, shoot and fruit lesions that develop during the spring, and which also cause secondary infections. During warm, wet weather in spring and early summer, the bacterium oozes out of overwintering lesions and infects new growth via the stomal pores or wounds. The bacterium may also survive for various periods of time in the soil or associated with other hosts.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110300012553522536Island text1.9706619.76926.0172Neighbours11BLASTN+IslandViewer 103000.gbk
216951019477925270Island text2.1530623.720724.7802Neighbours11BLASTN+169510.gbk
3457482*48039122910Island text1.4833218.634517.493Neighbours11BLASTN PAI DB457482.gbk
41203405*123359930195Island text1.9776624.49728.0881Neighbours11BLASTN+IslandViewer 1203405.gbk
51491001151255221552Island text1.5984522.228824.6839Neighbours11BLASTN1491001.gbk
61716831*175716240332Island text3.4729437.683723.3731Neighbours11BLASTN+IslandViewer 1716831.gbk
72091547212059929053Island text1.6746522.062630.8129Neighbours11BLASTN2091547.gbk
82233000*226150128502Island text1.9750322.675520.5378Neighbours11BLASTN+IslandViewer 2233000.gbk
92435058*245860723550Island text1.4597218.36723.5961Neighbours11BLASTN+IslandViewer 2435058.gbk
102639080265929020211Island text1.492221.999622.7707Neighbours11BLASTNIslandViewer 2639080.gbk
112824000285062126622Island text1.7820321.908820.732Neighbours11BLASTN+IslandViewer 2824000.gbk
122956404297807421671Island text1.5923418.506832.0819Neighbours11BLASTNIslandViewer 2956404.gbk
133060484*309971939236Island text2.1498324.81324.9689Neighbours11BLASTN+IslandViewer 3060484.gbk
143113343313961926277Island text2.2004222.972923.5Neighbours11BLASTN+IslandViewer 3113343.gbk
153396136342036024225Island text1.6394323.573325.841Neighbours11BLASTN+IslandViewer 3396136.gbk
163812778*386982357046Island text1.7141622.138720.1744Neighbours11BLASTN+IslandViewer PAI DB3812778.gbk
174258788428067521888Island text1.5983622.50920.1051Neighbours11BLASTN+4258788.gbk
184568892*459309924208Island text2.8956325.91833.8605Neighbours11BLASTN4568892.gbk
194618988*466090741920Island text2.4377528.345221.1818Neighbours11BLASTN+IslandViewer 4618988.gbk
204946884*497347526592Island text1.644118.170920.5222Neighbours11BLASTN+IslandViewer 4946884.gbk
215023500504659923100Island text2.4118925.8929.4347Neighbours11BLASTN+IslandViewer 5023500.gbk
225056650*508530628657Island text2.8944825.314933.2945Neighbours11BLASTN+5056650.gbk