Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_003912: Campylobacter jejuni RM1221, complete genome

NCBI: NC_003912

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain (RM1221; ATCC BAA-1062) was isolated from the skin of a retail chicken by the Produce Safety and Microbiology Research Unit (Western Regional Research Center, Albany, CA) and minimally passaged. Causes food poisoning. This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130265*5431024046Island text2.2177717.434230.4571Neighbours21BLASTN+30265.gbk
2426676*45038423709Island text2.3225218.817930.395Neighbours21BLASTN+426676.gbk
3472000*49506923070Island text1.3843314.792125.2345Neighbours21BLASTN+IslandViewer 472000.gbk
4510498*53223721740Island text1.728815.241128.7411Neighbours21BLASTN+510498.gbk
5767500*79119123692Island text2.0014218.071927.8512Neighbours21BLASTN767500.gbk
61345814*136407118258Island text1.6085414.062522.6885Neighbours21BLASTN+IslandViewer 1345814.gbk
71629937165570025764Island text1.500114.737425.9776Neighbours21BLASTN+1629937.gbk
81742370*177273330364Island text1.818117.104229.6987Neighbours21BLASTN1742370.gbk