Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_003910: Colwellia psychrerythraea 34H, complete genome

NCBI: NC_003910

Host Lineage: Colwellia psychrerythraea; Colwellia; Colwelliaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Arctic marine sediments. Psychrophilic bacterium. This obligately psychrophilic red-pigmented organism is often found in sea ice, and can grow in temperatures down to -5 C, remaining motile even at those low temperatures. It can produce extracellular enzymes such as proteases that have activity at very low temperatures.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118763021041422785Island text1.6185524.799440.8515Neighbours21BLASTN+187630.gbk
248677651195225177Island text3.2419720.493512.3346Neighbours21BLASTNIslandViewer 486776.gbk
32175305219812622822Island text3.0072120.376315.1602Neighbours21BLASTN2175305.gbk
42588000261028622287Island text1.4771134.496627.8048Neighbours21BLASTNIslandViewer 2588000.gbk
53448983346973420752Island text1.6000723.402528.4155Neighbours213448983.gbk
64234000426880834809Island text1.5764730.523632.0516Neighbours41BLASTN+IslandViewer 4234000.gbk