Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_003869: Thermoanaerobacter tengcongensis MB4, complete genome

NCBI: NC_003869

Host Lineage: Caldanaerobacter subterraneus; Caldanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: This organism was originally isolated from a hot spring in Tengcong, China, and is the type strain for the species. Genomic analysis indicates it is similar to Bacillus halodurans and that it has one of the most biased leading strand distribution of genes. Although the organism has not been observed to be motile or to sporulate, it does contain genes for both functions. The bacterium produces acetate and ethanol from glucose and cannot degrade xylan and cellulose.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114153*3317319021Island text1.8446226.422745.0877NeighboursBLASTN14153.gbk
245560*6745221893Island text3.2666632.408252.7485NeighboursBLASTN45560.gbk
374836*10194827113Island text2.9102438.939548.1441NeighboursBLASTN74836.gbk
494800097076722768Island text1.9630126.468341.2657NeighboursBLASTN948000.gbk
51643682*167230228621Island text1.7879132.901648.0634NeighboursBLASTN1643682.gbk
61812642183146018819Island text2.1306227.032749.059NeighboursBLASTN1812642.gbk
71971766199460822843Island text2.714627.711645.4684Neighbours21BLASTNIslandViewer 1971766.gbk
82099000211791718918Island text2.1041427.471449.0133NeighboursBLASTN2099000.gbk
92143892*219937255481Island text2.8212931.589248.1923NeighboursBLASTN+2143892.gbk
102267627228759019964Island text2.4635927.348850.0396NeighboursBLASTN2267627.gbk