Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003551: Methanopyrus kandleri AV19, complete genome

NCBI: NC_003551

Host Lineage: Methanopyrus kandleri; Methanopyrus; Methanopyraceae; Methanopyrales; Euryarchaeota; Archaea

General Information: Thermophilic methanogenic archaeon. This organism has been found at Guaymas hot vents at a depth of 2000, at a depth of 1006 m on the Kolbeinsey Ridge north of Iceland and on hydrothermically heated black smoker walls at a depth of 3650 m at the Mid-Atlantic Ridge. This methanogen grows chemolithoautotrophically at 80-110ÂșC in a hydrogen-carbon dioxide atmosphere.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1154883*17509020208Island text1.5881319.500230.9508Neighbours12BLASTN154883.gbk
2260000*28519025191Island text1.8305223.618828.8187Neighbours12BLASTN260000.gbk
3390268*41439824131Island text1.9273222.853437.2129Neighbours18BLASTN390268.gbk
441580344403428232Island text1.6211823.013730.9447Neighbours12415803.gbk
5478065*50181723753Island text1.8121622.486521.7754Neighbours18+478065.gbk
6659236*68522925994Island text1.6417220.911730.7262Neighbours18BLASTN659236.gbk
7723901*74690423004Island text1.5400320.792814.0029Neighbours12BLASTN723901.gbk
8793046*81226419219Island text1.5283821.999620.575Neighbours18793046.gbk
9812939*83164618708Island text1.5952219.28224.9848Neighbours18BLASTN812939.gbk
10860862*88842227561Island text2.5574129.469428.3944Neighbours12BLASTN860862.gbk
111113424113636322940Island text1.6506621.747323.9615Neighbours18BLASTN1113424.gbk
121245681127052924849Island text1.4985322.902529.4189Neighbours12BLASTN1245681.gbk
131650476*167652626051Island text1.9958222.966634.2515Neighbours18BLASTN+1650476.gbk
141678882*170599927118Island text1.5507322.355325.874Neighbours18+1678882.gbk