Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_003485: Streptococcus pyogenes MGAS8232, complete genome

NCBI: NC_003485

Host Lineage: Streptococcus pyogenes; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a serotype M18 strain often associated with acute rheumatic fever outbreaks in the USA. Causes tonsilitis. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is a member of the normal human nasopharyngeal flora. S. pyogenes is a group A streptococcus and is the leading cause of uncomplicated bacterial pharyngitis and tonsillitis. This organism is commonly referred to by the lay press as "flesh eating bacteria".

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1359715826622296Island text1.3684725.814734.4926Neighbours21BLASTN35971.gbk
229614031582719688Island text1.615225.113138.0071Neighbours21BLASTN+IslandViewer 296140.gbk
331667933776221084Island text1.678224.576737.4772Neighbours21BLASTN+IslandViewer 316679.gbk
457994659874318798Island text1.7428822.914638.3908Neighbours21BLASTNIslandViewer 579946.gbk
560264062428621647Island text1.6396624.658836.5453Neighbours21BLASTN+602640.gbk
61041280105967218393Island text1.5283426.574740.2851Neighbours21BLASTN+1041280.gbk
71061344108091519572Island text1.8127823.662536.3625Neighbours21BLASTN+1061344.gbk
81228149124712618978Island text1.6370522.805234.8764Neighbours21BLASTN+IslandViewer 1228149.gbk
91450045*148322833184Island text1.5499525.004339.9692Neighbours21BLASTNIslandViewer 1450045.gbk
101707653*172659918947Island text1.4909528.252727.5003Neighbours21BLASTN1707653.gbk