Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003413: Pyrococcus furiosus DSM 3638, complete genome

NCBI: NC_003413

Host Lineage: Pyrococcus furiosus; Pyrococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: This strain was isolated from a shallow marine solfataric (volcanic area that gives off sulfuric gases) region at Vulcano Island, Italy. This organism is a strictly anaerobic, hyperthermophilic archaeon. Growth occurs at temperatures between 67 and 103 degrees C, with optimal growth at 100 degrees C and a pH of 7.0. This organism is highly motile due to a bundle of flagella.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137233*6146324231Island text1.5417323.972539.4932Neighbours21BLASTN37233.gbk
2128228*15645728230Island text2.7003142.779638.3451Neighbours21BLASTN+128228.gbk
3181525*20476123237Island text1.8064421.184941.552Neighbours21BLASTN+181525.gbk
4214120*24037726258Island text1.816926.249145.7109Neighbours21BLASTN214120.gbk
5337963*36023622274Island text1.6577823.650336.6671Neighbours21BLASTN337963.gbk
6503315*52612622812Island text1.5840424.08836.3564Neighbours21BLASTN+503315.gbk
7603157*62244419288Island text1.6995624.376838.202Neighbours36BLASTN603157.gbk
869447572471530241Island text1.6780233.387225.3716Neighbours36BLASTNIslandViewer 694475.gbk
974890677209923194Island text2.0856424.641347.3505Neighbours21BLASTN+IslandViewer 748906.gbk
10857480*87652119042Island text1.5585223.461839.2131Neighbours21BLASTN+857480.gbk
1189396091582821869Island text1.9568526.032946.5411Neighbours21BLASTN+893960.gbk
12916398*93520318806Island text1.8877223.808441.3144Neighbours21BLASTN916398.gbk
131107965*112714519181Island text2.2016122.467838.7745Neighbours21BLASTN+1107965.gbk
141448377*147265524279Island text1.9416225.780246.2333Neighbours21BLASTN1448377.gbk
151521080*156055439475Island text1.7052323.080338.3817Neighbours21BLASTN+1521080.gbk
161666520*168862122102Island text2.1114628.513348.5831Neighbours21BLASTN1666520.gbk
171820217*183825818042Island text1.5983623.978639.8069Neighbours36BLASTNIslandViewer 1820217.gbk
181847935*186605118117Island text1.7254922.583337.0691Neighbours21BLASTN+1847935.gbk