Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003364: Pyrobaculum aerophilum str. IM2, complete genome

NCBI: NC_003364

Host Lineage: Pyrobaculum aerophilum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: This organism was isolated from a boiling marine water hole in Maronti Beach, Ischia, Italy. It grows optimally a 100ºC and pH 7.0. Growth can occur at temperatures between 74 and 104 ºC. Nitrate-reducing hyperthermophilic archeon. This organism is a facultatively anaerobic, nitrate-reducing hyperthermophilic archaeon. It is able to grow both aerobically and anaerobically by dissimilatory nitrate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1225500*24992124422Island text2.1098729.675336.5528Neighbours65BLASTN225500.gbk
2281000*30583924840Island text2.5358235.917416.7791Neighbours62BLASTN281000.gbk
3359500*38000220503Island text1.5096231.906653.3439Neighbours62BLASTN+359500.gbk
4402268*42670324436Island text1.6128430.120838.316Neighbours62BLASTN+402268.gbk
5484293*50513420842Island text1.9946929.681421.2011Neighbours65BLASTN484293.gbk
6756813*78060823796Island text1.5027328.939728.0728Neighbours62BLASTN+756813.gbk
7951062*97421523154Island text1.6631629.030944.9263Neighbours62BLASTN951062.gbk
81081846*110828326438Island text2.1492433.583929.2305Neighbours65BLASTN1081846.gbk
91282000*131609934100Island text1.4752128.724738.3217Neighbours62BLASTN1282000.gbk
101463317150009936783Island text1.5426629.097934.7992Neighbours62BLASTN+1463317.gbk
111528762155276424003Island text1.8985432.007638.0928Neighbours62BLASTN1528762.gbk
121827570*184922821659Island text1.6699933.6129.8585Neighbours62BLASTN+1827570.gbk
132111500*213542623927Island text2.1106935.108317.8748Neighbours65BLASTNIslandViewer 2111500.gbk