Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003296: Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete

NCBI: NC_003296

Host Lineage: Ralstonia solanacearum; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain is a race 1 strain isolated from the tomato plant and is also pathogenic on Arabidopsis thaliana. It specifically invades the plant xylem. Plant pathogen. This organism is a phytopathogen that is found in the soil and causes systemic wilting disease in many important food crops such as tomatoes, potatoes, bananas, tobacco, pepper, peanut, ginger, and eucalyptus. It can infect plants found in over 50 different families and this pathogen can be carried asymptomatically in some species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18731310965322341Island text1.5878219.516123.3037Neighbours11BLASTN+87313.gbk
214088916133820450Island text1.8574119.613318.5479Neighbours11BLASTN+140889.gbk
316850618825219747Island text1.5402518.67130.229Neighbours11BLASTN+168506.gbk
426211828615024033Island text1.8809121.159820.8242Neighbours11BLASTN+262118.gbk
555683661181954984Island text1.773521.079529.3301Neighbours11BLASTN+556836.gbk
661200063500323004Island text1.6087423.55310.4215Neighbours11BLASTN+612000.gbk
767379072609952310Island text2.3116326.688629.1695Neighbours11BLASTN+673790.gbk
890394792526521319Island text1.5468619.750512.3233Neighbours11BLASTN+903947.gbk
9941920*98880146882Island text1.9503224.234828.5648Neighbours11BLASTN941920.gbk
101341353136699725645Island text1.9260325.614132.7766Neighbours11BLASTN1341353.gbk
111419992144318623195Island text2.1529622.955332.8115Neighbours11BLASTN+1419992.gbk
121461538148411822581Island text1.4034118.59819.0279Neighbours11BLASTN1461538.gbk
131665569169071125143Island text2.0490921.199120.0872Neighbours11BLASTN+1665569.gbk
141696958171877421817Island text1.914720.619519.6221Neighbours11BLASTN+1696958.gbk
151927616194986922254Island text1.5719518.327518.5751Neighbours11BLASTN+1927616.gbk
161980687200901828332Island text2.0106820.861722.7062Neighbours11BLASTN+1980687.gbk