Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003272: Nostoc sp. PCC 7120, complete genome

NCBI: NC_003272

Host Lineage: Nostoc; Nostoc; Nostocaceae; Nostocales; Cyanobacteria; Bacteria

General Information: Photosynthesis, Nitrogen fixation. Filamentous, heterocyst-forming cyanobacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163797066009922130Island text2.6424522.139518.4066Neighbours21BLASTN+637970.gbk
278443781199627560Island text1.4069128.562745.98Neighbours21BLASTNIslandViewer 784437.gbk
31862487*188296320477Island text1.5566229.93846.2456Neighbours14BLASTN1862487.gbk
42560329258040420076Island text1.5267534.837133.3567Neighbours21BLASTN+IslandViewer 2560329.gbk
53148687316683918153Island text1.5163127.425840.8089Neighbours14BLASTN3148687.gbk
63237643325976622124Island text1.4939726.581140.5696Neighbours14BLASTN+3237643.gbk
73275413329888623474Island text2.0015921.695615.0566Neighbours21BLASTN+IslandViewer 3275413.gbk
84621554464220620653Island text1.5269925.974342.158Neighbours21BLASTN4621554.gbk
95040500*506301222513Island text1.5635130.33242.6072Neighbours14BLASTN5040500.gbk
105184000*520609922100Island text1.4031622.671437.1422Neighbours21BLASTN5184000.gbk