Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003212: Listeria innocua Clip11262, complete genome

NCBI: NC_003212

Host Lineage: Listeria innocua; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Nonpathogenic soil organism. The organism is the most frequently encountered non-pathogenic Listeria and is very similar to Listeria monocytogenes. It is found in decaying vegetable matter and soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157061*10108744027Island text2.4875622.790640.8239Neighbours21BLASTN+57061.gbk
245621447968423471Island text2.3238725.244646.2389Neighbours21BLASTN456214.gbk
372111274471523604Island text1.6795322.254338.6525Neighbours21BLASTN721112.gbk
41248000126620518206Island text2.4051921.890237.6477Neighbours21BLASTNIslandViewer 1248000.gbk
51713958174939635439Island text1.9700122.582738.4734Neighbours21BLASTN+IslandViewer 1713958.gbk
61958500197666418165Island text1.5679522.18337.2457Neighbours21BLASTN1958500.gbk
72293425231824824824Island text2.1051522.826541.156Neighbours21BLASTN2293425.gbk
82413824*244446830645Island text2.2649421.915539.0784Neighbours21BLASTN+IslandViewer 2413824.gbk
92592600261244219843Island text1.9047621.336937.7878Neighbours21BLASTNIslandViewer 2592600.gbk
102814737*283390519169Island text1.5115424.258334.9434Neighbours21BLASTN2814737.gbk
112837366286009922734Island text1.522322.367544.5974Neighbours21BLASTN+2837366.gbk