Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003106: Sulfolobus tokodaii str. 7, complete genome

NCBI: NC_003106

Host Lineage: Sulfolobus tokodaii; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Acidophilic archaeon. This organism is an obligate aerobic, hyperthermophilic, acidophilic, sulfur-metabolizing archaeon. This organism was isolated from Beppu Hot Springs in the geothermal area of Kyushu Island, Japan. Growth occurs optimally at 80°C and pH 2.5-3.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159703009924130Island text1.9701215.740525.7522Neighbours21BLASTNIslandViewer 5970.gbk
2518547422022367Island text2.3753320.289532.6904Neighbours21BLASTN+51854.gbk
39133911077019432Island text1.9229116.670728.0607Neighbours21BLASTN PAI DB91339.gbk
4282320*30034418025Island text2.6202816.327230.8564Neighbours21BLASTN282320.gbk
5419689*43970020012Island text2.7867916.822731.3284Neighbours21BLASTN419689.gbk
688317490634723174Island text2.1326217.644936.2142Neighbours21BLASTN+883174.gbk
7922773*94509922327Island text2.4885720.330733.0266Neighbours21BLASTN922773.gbk
81027176105013522960Island text1.4868718.427825.7218Neighbours21BLASTN+1027176.gbk
91065476108821022735Island text1.4701217.9911.6153Neighbours21BLASTN+1065476.gbk
101175000*120140326404Island text2.1223432.158428.1382Neighbours21BLASTNIslandViewer 1175000.gbk
111313692133709923408Island text2.3171822.772822.5955Neighbours21BLASTNIslandViewer 1313692.gbk
121367404*138910621703Island text2.7676817.312133.7643Neighbours21BLASTN1367404.gbk
131435295*145619720903Island text2.0101317.924432.0471Neighbours21BLASTN1435295.gbk
141457802*148026522464Island text1.6284718.330532.7506Neighbours21BLASTN1457802.gbk
151484768*150546020693Island text2.0658817.073731.5944Neighbours21BLASTN1484768.gbk
161714000*173659922600Island text1.5429119.690216.818Neighbours21BLASTN+IslandViewer 1714000.gbk
171786000180637120372Island text1.8606517.19624.8904Neighbours21BLASTN+1786000.gbk
181809137185319344057Island text1.9064819.100134.8094Neighbours21BLASTN+1809137.gbk
191879441189790618466Island text1.6040116.761920.2522Neighbours21BLASTN1879441.gbk
201899691192409924409Island text1.9428920.776728.1546Neighbours21BLASTN+1899691.gbk
211999000*201860119602Island text1.8305616.903228.6484Neighbours21BLASTNIslandViewer 1999000.gbk
222060628*208557724950Island text2.0009118.063927.1643Neighbours21BLASTN2060628.gbk
232197638*221759919962Island text1.7507517.912232.3989Neighbours21BLASTN2197638.gbk
242272313*229176419452Island text1.8117916.020226.0933Neighbours21BLASTN2272313.gbk
252496232251809921868Island text1.6605618.095424.4086Neighbours21BLASTN+IslandViewer 2496232.gbk