Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003047: Sinorhizobium meliloti 1021, complete genome

NCBI: NC_003047

Host Lineage: Sinorhizobium meliloti; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Streptomycin resistant derivative of strain 2011. Plant symbiotic bacterium. This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, in this case the alfalfa plant (Medicago sativa). Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
174986*10114626161Island text2.1537425.95737.3834Neighbours11BLASTN+IslandViewer 74986.gbk
253615156019924049Island text1.560524.126520.6927Neighbours11BLASTN+IslandViewer 536151.gbk
32477810*250031722508Island text1.6204722.583321.1719Neighbours11BLASTNIslandViewer 2477810.gbk
42798367*282259924233Island text2.2794527.654735.254Neighbours11BLASTN+2798367.gbk
53202125*322912727003Island text2.4166725.773634.0084Neighbours11BLASTN+3202125.gbk
63360000341859958600Island text1.6487922.473624.7214Neighbours11BLASTN+IslandViewer 3360000.gbk
73419212*345066231451Island text2.1987127.662926.9196Neighbours11BLASTNIslandViewer 3419212.gbk