Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002977: Methylococcus capsulatus str. Bath, complete genome

NCBI: NC_002977

Host Lineage: Methylococcus capsulatus; Methylococcus; Methylococcaceae; Methylococcales; Proteobacteria; Bacteria

General Information: Methane-utilizing bacterium. This organism is a methanotroph, and can utilize methane (methanol) as the sole carbon and energy source through the use of monooxygenases. The Methylococci are environmentally important since they are involved in oxidation of methane, a greenhouse gas, and may also be used for bioremediation of polluted sites.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165248167459922119Island text1.8597425.685837.7793Neighbours11BLASTN+652481.gbk
292558894955323966Island text1.6595119.339733.5364Neighbours11BLASTN+925588.gbk
31198438121974121304Island text1.5120724.683923.9493Neighbours11BLASTN1198438.gbk
41600350162109920750Island text1.6466324.042926.6136Neighbours11BLASTN+1600350.gbk
52254440*228000425565Island text1.8370126.742427.6373Neighbours11BLASTN PAI DB2254440.gbk
62407392*243909931708Island text2.2880334.00926.9275Neighbours11BLASTN+2407392.gbk
72719774274765127878Island text1.5321719.81439.542Neighbours11BLASTN+2719774.gbk