Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002967: Treponema denticola ATCC 35405, complete genome

NCBI: NC_002967

Host Lineage: Treponema denticola; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema denticola ATCC 35405 was isolated from a human periodontal pocket. Associated with periodontal disease. This organism is a member of the spirochaetales and is a motile, slender, helically shaped flexible organism. Obligately anaerobic growth occurs at 30-42°C, with a pH of 6.5-8.0. The bacterium is commonly found in the oral cavity of humans and often associated with periodontal disease, an inflammation of the gum tissue that frequently precedes bone resorbtion and subsequent tooth loss.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155200057444122442Island text1.766421.546733.5303Neighbours21BLASTN552000.gbk
2800109*82264722539Island text1.5823823.47634.115Neighbours21BLASTN+800109.gbk
31166965119613129167Island text1.9848522.784241.9914Neighbours21+1166965.gbk
41589069*162427335205Island text3.7322728.193444.1857Neighbours21BLASTN1589069.gbk
51804412182335018939Island text3.2723621.852213.5563Neighbours21BLASTN+1804412.gbk
61844000188454040541Island text3.7935522.404920.093Neighbours21BLASTN+IslandViewer 1844000.gbk
72032000205111119112Island text2.6106721.580122.8103Neighbours21BLASTN2032000.gbk
82194829*221512520297Island text2.0825621.294432.9212Neighbours21BLASTNIslandViewer 2194829.gbk
92507993253015722165Island text1.4713427.863632.2999Neighbours340BLASTN2507993.gbk
102656000*267825922260Island text1.454132.216724.7168Neighbours330BLASTN+IslandViewer 2656000.gbk