Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002951: Staphylococcus aureus subsp. aureus COL, complete genome

NCBI: NC_002951

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a methicillin-resistant (MRSA) strain and is also resistant to several other antibiotics including penicillin and tetracycline. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. Continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115441*3566720227Island text1.6367520.734731.3941Neighbours21BLASTN15441.gbk
2495357109921565Island text1.6004122.666439.073Neighbours21BLASTN49535.gbk
335102938944738419Island text2.6018820.359737.2599Neighbours21BLASTN+351029.gbk
4596000*61934223343Island text1.5418420.371129.8781Neighbours21BLASTN596000.gbk
562346164703323573Island text1.7063620.872438.874Neighbours21BLASTN623461.gbk
61474465151709942635Island text1.7158829.137644.0295Neighbours325BLASTN+1474465.gbk
71848684*187248723804Island text1.8770921.055436.2326Neighbours21BLASTN+1848684.gbk
82153571*217716123591Island text1.5234420.379431.8736Neighbours21BLASTN2153571.gbk
92208813*223209923287Island text1.7504922.589137.8563NeighboursBLASTN2208813.gbk
102288674*230711718444Island text1.6398119.382330.7407Neighbours21BLASTN+2288674.gbk
112448000246790519906Island text1.7670320.65629.8587Neighbours21BLASTN+2448000.gbk
122554511257669622186Island text2.1188621.487731.5542Neighbours21BLASTN+2554511.gbk