Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002939: Geobacter sulfurreducens PCA, complete genome

NCBI: NC_002939

Host Lineage: Geobacter sulfurreducens; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from surface sediments of a hydrocarbon-contaminated ditch in Norman, Oklahoma, USA. Common metal-reducing bacterium. This organism, similar to what is observed in Geobacter metallireducens, is one of the predominant metal-reducing bacteria found in subsurface communities.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147406*8127533870Island text1.6060728.501941.3205Neighbours11BLASTN+47406.gbk
217383319586722035Island text1.5869629.700438.2385Neighbours11BLASTN+IslandViewer 173833.gbk
336046239118430723Island text2.466536.334939.6792Neighbours11BLASTN360462.gbk
4579087*60819229106Island text2.8626138.871637.6066Neighbours11BLASTN+579087.gbk
580579482823022437Island text2.9499434.994537.2376Neighbours11BLASTN+IslandViewer 805794.gbk
61021297104793526639Island text2.3497235.038128.7455Neighbours11BLASTN+1021297.gbk
71480474*150560725134Island text3.0443742.784430.5172Neighbours11BLASTN+1480474.gbk
81505701152809922399Island text1.4872128.769532.4826Neighbours11BLASTN+1505701.gbk
91601706*162134919644Island text1.5649930.227130.5457Neighbours11BLASTN+1601706.gbk
101634843*166966434822Island text3.6574140.916840.7038Neighbours33BLASTN+1634843.gbk
111866651189172025070Island text2.2226135.414627.7318Neighbours11BLASTN+IslandViewer 1866651.gbk
121926084*196150735424Island text1.765829.581124.9704Neighbours33BLASTN+1926084.gbk
132008304204522736924Island text8.1170359.359830.1176Neighbours33BLASTN+IslandViewer 2008304.gbk
142124642215969735056Island text2.5235335.265540.3831Neighbours33BLASTN2124642.gbk
152315402*239364278241Island text1.8791330.90325.0753Neighbours11BLASTN+IslandViewer 2315402.gbk
162337402*239671759316Island text1.8748728.723925.1553Neighbours33BLASTN+IslandViewer 2337402.gbk
172454686247498020295Island text2.167831.874225.332Neighbours11BLASTN2454686.gbk
182617037264347926443Island text3.5137944.350437.377Neighbours11BLASTN+IslandViewer 2617037.gbk
192697767272022322457Island text1.9489828.325632.5192Neighbours11BLASTN+2697767.gbk
202844240*287693932700Island text2.8896941.854928.8396Neighbours11BLASTN+IslandViewer 2844240.gbk
213043068306461721550Island text2.1683135.40731.723Neighbours11BLASTN+IslandViewer 3043068.gbk
223108907*314227133365Island text1.9967132.790339.2831Neighbours11BLASTN3108907.gbk
233303989333092426936Island text2.4661134.745938.1008Neighbours11BLASTN3303989.gbk