Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002936: Dehalococcoides ethenogenes 195, complete genome

NCBI: NC_002936

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Dechlorinates tetrachloroethene. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1678969490227007Island text1.7740334.51423.4673Neighbours21BLASTN+IslandViewer 67896.gbk
2149100*17314324044Island text1.5097943.089719.1926Neighbours32BLASTN+IslandViewer 149100.gbk
325376027452120762Island text1.6390330.311732.5496Neighbours32BLASTN+IslandViewer 253760.gbk
428552730889723371Island text1.9820432.223935.9843Neighbours21BLASTN+IslandViewer 285527.gbk
5797110*82318926080Island text2.54535.387122.1052Neighbours21BLASTN+IslandViewer 797110.gbk
61004570102326218693Island text1.5136840.983744.8654Neighbours336BLASTNIslandViewer 1004570.gbk
71319266*134753128266Island text2.1106137.269320.3464Neighbours21BLASTN+IslandViewer 1319266.gbk
81395432*141906223631Island text2.2466833.515216.3319Neighbours22BLASTNIslandViewer 1395432.gbk