Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002928: Bordetella parapertussis 12822, complete genome

NCBI: NC_002928

Host Lineage: Bordetella parapertussis; Bordetella; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from an infected infant in Germany in 1993. Causes respiratory illness in humans and sheep. This group of organisms is capable of invading the respiratory tract of animals and causing severe diseases. They express a number of virulence factors in order to do this including filamentous hemagglutins for attachment, cytotoxins, and proteins that form a type III secretion system for transport of effector molecules into host cells. Bordetella parapertussis can infect humans and sheep and it is unable to persist in the environment. This organism causes a respiratory disease similar to, but less severe than, Bordetella pertussis in humans and a chronic pneumonia in sheep.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112312616356640441Island text2.0682125.321329.454Neighbours11BLASTN+IslandViewer 123126.gbk
2507749*56809960351Island text4.2682432.676629.6993Neighbours11BLASTN+IslandViewer 507749.gbk
31351750137549523746Island text1.8952523.620430.3031Neighbours11BLASTN+1351750.gbk
43715492*373400118510Island text1.5205717.369925.1766Neighbours11BLASTN+IslandViewer 3715492.gbk
53781657380018118525Island text1.5072119.789614.5206Neighbours11BLASTNIslandViewer 3781657.gbk