Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002758: Staphylococcus aureus subsp. aureus Mu50, complete genome

NCBI: NC_002758

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a methicillin-resistant (MRSA) strain with vancomycin resistance (VRSA) isolated in 1997 from the pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3359917600Island text1.605319.723429.6798Neighbours21BLASTN16000.gbk
232588934825722369Island text1.6770917.971835.0347Neighbours21BLASTN325889.gbk
343446245281818357Island text1.5197719.558624.6559Neighbours21BLASTN+IslandViewer 434462.gbk
447551649964424129Island text3.965918.868631.0269Neighbours21BLASTN PAI DB475516.gbk
551124753009918853Island text1.7908319.674129.5006Neighbours21BLASTN511247.gbk
6592892*61622023329Island text1.5375421.465731.0356Neighbours21BLASTN592892.gbk
762200064387421875Island text1.6806120.486936.5011Neighbours21BLASTN622000.gbk
891882794103822212Island text2.7423119.718237.183Neighbours21BLASTNIslandViewer 918827.gbk
91508996155209943104Island text1.6881928.861643.8835Neighbours325BLASTN+1508996.gbk
101880323*190322422902Island text1.8764820.616534.0913Neighbours21BLASTN1880323.gbk
112101137212959928463Island text2.7091421.508139.4473Neighbours21BLASTN+ PAI DB2101137.gbk
122227874*225013222259Island text1.5550618.588932.4035Neighbours21BLASTN2227874.gbk
132359329*237711617788Island text1.6113318.892930.5275Neighbours21BLASTN+2359329.gbk
142515310253840923100Island text1.9464519.364131.3376Neighbours21BLASTN2515310.gbk
152628000264725819259Island text2.240718.851830.6067Neighbours21BLASTN+IslandViewer 2628000.gbk