Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002754: Sulfolobus solfataricus P2, complete genome

NCBI: NC_002754

Host Lineage: Sulfolobus solfataricus; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Hyperthermophilic acidophilic sulfur-metabolizing archeon. This organism is an obligate aerobic, hyperthermophilic, acidophilic, sulfur-metabolizing archeon. Growth occurs between 50 and 87 degrees C with optimal growth at 85 degrees C and a pH of 2-4.5.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
146297*6632820032Island text2.1417920.116732.5238Neighbours21BLASTN+46297.gbk
2105256*14672741472Island text2.3096119.8231.5507Neighbours21BLASTN+105256.gbk
3181819*20059918781Island text2.6612919.653936.862Neighbours21BLASTN181819.gbk
4285759*30484919091Island text2.2619319.2129.827Neighbours21BLASTN285759.gbk
5319315*33866519351Island text2.0697618.06335.1809Neighbours21BLASTN319315.gbk
6435745*46091125167Island text1.8503822.374221.4615Neighbours21BLASTN+IslandViewer 435745.gbk
7491695*51266020966Island text2.4905921.609939.2344Neighbours21BLASTN491695.gbk
8513790*53717423385Island text2.1640620.476734.4134Neighbours21BLASTN513790.gbk
9537792*56054722756Island text2.8965919.178637.3127Neighbours21BLASTN537792.gbk
10595591*62397728387Island text2.83820.771839.6877Neighbours21BLASTN595591.gbk
1170574172873722997Island text1.3706919.242525.1249Neighbours21BLASTN+705741.gbk
1282418084315918980Island text2.5349118.637531.5142Neighbours21BLASTN+824180.gbk
131061851108109919249Island text1.9939519.66533.5343Neighbours21BLASTN+IslandViewer 1061851.gbk
141269463*129595126489Island text2.2882923.823443.3954Neighbours21BLASTN+IslandViewer 1269463.gbk
151329000135567426675Island text1.5891624.833222.4418Neighbours21BLASTN+IslandViewer 1329000.gbk
161661000168699025991Island text1.8434526.49630.0191Neighbours21BLASTN+IslandViewer 1661000.gbk
171749834177232822495Island text1.9831421.013539.1264Neighbours21BLASTN+1749834.gbk
181782460180859926140Island text2.2377226.871627.2956Neighbours21BLASTN+IslandViewer 1782460.gbk
191811500*183568224183Island text1.8163721.79837.9196Neighbours21BLASTN+1811500.gbk
201968668199209923432Island text1.5271719.400535.9788Neighbours21BLASTN+1968668.gbk
212326298235109924802Island text1.7044223.345931.2945Neighbours21BLASTN+2326298.gbk
222391867241728125415Island text2.172719.13334.0115Neighbours21BLASTN+IslandViewer 2391867.gbk
232505750252883923090Island text1.8896215.597629.0778Neighbours21BLASTN2505750.gbk
242621884264059918716Island text2.1426821.017835.4651Neighbours21BLASTN+2621884.gbk
252667322270493837617Island text1.469621.267320.5956Neighbours21BLASTN+IslandViewer 2667322.gbk
262764032278417420143Island text1.5339221.250325.4218Neighbours21BLASTN+2764032.gbk