Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002745: Staphylococcus aureus subsp. aureus N315, complete genome

NCBI: NC_002745

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a methicillin-resistant (MRSA) strain isolated in 1982 from a pharyngeal smear of a Japanese patient. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3710921110Island text1.5961520.502328.3201Neighbours21BLASTN+IslandViewer 16000.gbk
232593234830022369Island text1.6877418.774333.9262Neighbours21BLASTN325932.gbk
345000047241122412Island text3.4938219.874830.2595Neighbours21BLASTN PAI DB450000.gbk
448750050530117802Island text1.8051420.634731.7517Neighbours21BLASTN487500.gbk
5572959*59197419016Island text1.5672520.430829.9881Neighbours21BLASTN572959.gbk
659794761962721681Island text1.6188821.826137.3745Neighbours21BLASTN597947.gbk
784084886459823751Island text1.4854221.151533.2684Neighbours21BLASTN840848.gbk
81432585147535342769Island text1.6848529.427344.1609Neighbours325BLASTN1432585.gbk
91804000*182484520846Island text1.8112621.024734.9342Neighbours21BLASTN1804000.gbk
102018761203681818058Island text2.2123619.516134.4134Neighbours21BLASTN2018761.gbk
112152000*217427622277Island text1.5101720.069329.7174Neighbours21BLASTN2152000.gbk
122289829*230761617788Island text1.6099518.82930.5275Neighbours21BLASTN2289829.gbk
132446722246570618985Island text1.7047519.788129.488Neighbours21BLASTN2446722.gbk
142553138257683223695Island text1.9823320.546227.8854Neighbours21BLASTN+IslandViewer 2553138.gbk