Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002737: Streptococcus pyogenes M1 GAS, complete genome

NCBI: NC_002737

Host Lineage: Streptococcus pyogenes; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism is a strict human pathogen that was isolated from a patient with a wound infection. Causes tonsilitis. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is a member of the normal human nasopharyngeal flora. S. pyogenes is a group A streptococcus and is the leading cause of uncomplicated bacterial pharyngitis and tonsillitis. This organism is commonly referred to by the lay press as "flesh eating bacteria".

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153329156372230432Island text1.6067223.227840.4877Neighbours21BLASTN+IslandViewer 533291.gbk
278085779971218856Island text1.7140422.403935.7626Neighbours21BLASTN+780857.gbk
31207880122825220373Island text1.6172922.853841.485Neighbours21BLASTN+IslandViewer 1207880.gbk
41644602*166359918998Island text1.4982725.492531.6116Neighbours21BLASTN+1644602.gbk
51670164170789437731Island text1.5999522.116437.2998Neighbours21BLASTN+1670164.gbk