Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002678: Mesorhizobium loti MAFF303099, complete genome

NCBI: NC_002678

Host Lineage: Mesorhizobium loti; Mesorhizobium; Phyllobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Plant symbiont bacterium. This organism contains a symbiosis island that is responsible for symbiotic relationships with plants (lotus) which is similar to what is observed with other Rhizobia that form similar relationships with legumes. The bacterium enters root nodules and performs nitrogen-fixation for the plant cell while being provided with a protective environment to grow in. Nitrogen fixation and root nodule formation genes are carried on a symbiosis island.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134199636093318938Island text1.5083326.817919.1436Neighbours11BLASTN+IslandViewer 341996.gbk
242600045119625197Island text1.5189622.18320.7313BLASTN426000.gbk
376380879373829931Island text1.7214622.993723.1788Neighbours11BLASTN+IslandViewer 763808.gbk
42739829*276997330145Island text2.7994330.16737.2982Neighbours11BLASTN2739829.gbk
53210751*323209921349Island text1.664822.834119.3827Neighbours11BLASTN+IslandViewer 3210751.gbk
63701500374659945100Island text1.8660426.724626.1385Neighbours11BLASTN+IslandViewer 3701500.gbk
74618555464461426060Island text1.6544923.369815.6975Neighbours11BLASTN+4618555.gbk
84859111488349624386Island text1.6709825.193921.9502Neighbours11BLASTN+IslandViewer 4859111.gbk
94885790493387048081Island text1.5029320.353523.9941Neighbours11BLASTN+IslandViewer 4885790.gbk
105020000503841118412Island text1.4911618.184626.0507Neighbours11BLASTN+IslandViewer 5020000.gbk
115060670511283352164Island text1.7790324.330224.6345Neighbours11BLASTN+IslandViewer 5060670.gbk
125139557516359924043Island text1.5360524.684718.6403Neighbours11BLASTNIslandViewer PAI DB5139557.gbk
135714000573684422845Island text1.4679119.96622.7738Neighbours11BLASTN+IslandViewer 5714000.gbk
146061448608566524218Island text1.8907226.842626.4578Neighbours11BLASTN+IslandViewer 6061448.gbk
156232000625909927100Island text1.8701629.899128.2145Neighbours11BLASTN+IslandViewer 6232000.gbk
166608697662815419458Island text1.5484423.577329.0718Neighbours11BLASTNIslandViewer 6608697.gbk
177004370703428029911Island text1.6591823.354823.618Neighbours11BLASTN+IslandViewer 7004370.gbk