Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002677: Mycobacterium leprae TN, complete genome

NCBI: NC_002677

Host Lineage: Mycobacterium leprae; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (TN) was passaged through an armadillo in Tamil Nadu, India, and is the only strain of this species that has been successfully produced in quantities large enough for sequencing and biochemical analyses as the nine-banded armadillo was used as a surrogate host. Causative agent of human leprosy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2086920869Island text2.1814132.670239.7344Neighbours112BLASTN1.gbk
234750*5709922350Island text1.8234831.145437.8414NeighboursBLASTN34750.gbk
317317019196118792Island text1.5413124.246140.346Neighbours11BLASTN173170.gbk
4332923*35401721095Island text1.6766525.446349.5675Neighbours11BLASTN332923.gbk
536343238893225501Island text1.500327.067132.1416Neighbours11BLASTN+363432.gbk
642750044579518296Island text1.6361523.413843.2046NeighboursBLASTN427500.gbk
749104351327322231Island text1.557625.38342.027Neighbours11BLASTN+491043.gbk
856350058344419945Island text1.536124.197530.0463Neighbours11BLASTN563500.gbk
978200080196619967Island text1.6373927.043843.8872NeighboursBLASTN782000.gbk
101096500111516918670Island text1.5588224.659543.2909NeighboursBLASTN1096500.gbk
111380000140585225853Island text1.5134925.38345.2674Neighbours11BLASTN1380000.gbk
121462233148835226120Island text1.8818726.104846.1276Neighbours11BLASTN1462233.gbk
131716000173800622007Island text1.5292323.956247.8074NeighboursBLASTN1716000.gbk
141822500184168919190Island text1.6668723.846142.2905NeighboursBLASTN1822500.gbk
152241065*227975638692Island text1.6514324.894148.2474NeighboursBLASTN+2241065.gbk
162500000*252209922100Island text1.6191523.77841.7225Neighbours11BLASTN2500000.gbk
172539983256209922117Island text1.5571430.927834.7667Neighbours11BLASTN2539983.gbk
182571310*259641125102Island text1.7366325.465443.369NeighboursBLASTN2571310.gbk
192642860268248339624Island text1.6595423.503444.5855Neighbours11BLASTN2642860.gbk
202775365279491719553Island text1.7071424.048547.8621Neighbours11BLASTN2775365.gbk
213040711306032819618Island text1.5949623.891542.3164Neighbours11BLASTN3040711.gbk
223204710323257327864Island text1.7408428.140237.0381NeighboursBLASTN+3204710.gbk
233253057*327599922943Island text1.654924.385935.6073Neighbours11BLASTN3253057.gbk