Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002663: Pasteurella multocida subsp. multocida str. Pm70, complete genome

NCBI: NC_002663

Host Lineage: Pasteurella multocida; Pasteurella; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Pasteurella multocida subsp. multocida str. Pm70 was isolated in 1995 from a case of fowl cholera in chickens. Pathogen in humans, swine and poultry. This organism was one of the first pathogens ever sudied, and is named after Louis Pasteur, who used it in his vaccination studies in the 1880s. This organism usually resides in the mucous membranes of the intestinal, genital, and respiratory tissues and is an opportunistic pathogen that causes cholera in fowl, bovine hemorrhagic septicemia, and porcine atrophic rhinitis. Collectively these diseases cause millions of dollars in lost livestock every year. The organism can also infect humans if they are bitten by dogs and cats, which are carriers of the organism, but which are asymptomatic. This organism also expresses a hydrophilic capsule that inhibits phagocytosis and complemented-mediated attack.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1625008653124032Island text1.5896924.605538.5484Neighbours21BLASTN62500.gbk
256495859564230685Island text2.7196525.078727.1516Neighbours21BLASTNIslandViewer 564958.gbk
31988000201040322404Island text1.6387923.115324.5889Neighbours21BLASTNIslandViewer 1988000.gbk