Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002578: Thermoplasma acidophilum DSM 1728, complete genome

NCBI: NC_002578

Host Lineage: Thermoplasma acidophilum; Thermoplasma; Thermoplasmataceae; Thermoplasmatales; Euryarchaeota; Archaea

General Information: Thermophilic archaea. This organism is a thermophilic, acidophilic, archaea that was isolated from a self-heating coal refuse pile in southwestern Indiana. This facultative aerobe grows at temperatures 45-63 degrees C with optimal growth at 59 degrees C and pH of 0.5-4 (optimal pH 2.0).

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126848828724318756Island text1.6253527.239425.7553Neighbours21+268488.gbk
2377783*42173043948Island text2.358632.251718.5583Neighbours21BLASTNIslandViewer 377783.gbk
372963275670027069Island text2.3532328.55879.69814Neighbours21+IslandViewer 729632.gbk
4828000*86970941710Island text1.6238436.821435.0915BLASTN+828000.gbk
587760990009922491Island text1.8681526.915113.9055Neighbours321BLASTN877609.gbk
61305781*132865522875Island text1.8382531.380949.1205Neighbours321BLASTN1305781.gbk
71333827*135352319697Island text1.51728.474648.4011Neighbours321BLASTN+1333827.gbk
81434396*145492120526Island text2.1825828.524218.3366Neighbours21BLASTN+IslandViewer 1434396.gbk