Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002570: Bacillus halodurans C-125, complete genome

NCBI: NC_002570

Host Lineage: Bacillus halodurans; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Strain C-125 (JCM9153) was isolated in 1977 and is the most well studied alkaliphilic Bacillus organism. Alkaliphilic bacterium. This organism is similar to Bacillus subtilis but is alkaliphilic, grows poorly at neutral pH, and very well at pH >9.5. This bacterium produces a peptidoglycan that contains teichuronic peptides consisting of polyglutamic and polyglucuronic acids that counteract the halophilic environment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1126500*14516918670Island text2.0785330.579250.1462Neighbours31BLASTN+126500.gbk
2207555*23069123137Island text1.4786832.484246.9911Neighbours21207555.gbk
336700038709920100Island text1.5769233.46239.6861Neighbours31BLASTN+367000.gbk
438800040633818339Island text1.4683234.399344.1406Neighbours31BLASTN388000.gbk
583248085799125512Island text1.688831.89849.4731Neighbours21BLASTN+832480.gbk
61041342106409922758Island text1.5782224.689947.722Neighbours21BLASTN+1041342.gbk
71195356121809922744Island text1.3813632.222850.1096Neighbours21BLASTN+1195356.gbk
81220180124267322494Island text1.6298730.25850.2315Neighbours31BLASTN+1220180.gbk
91426000*145044224443Island text1.593328.018646.6622Neighbours21BLASTN+1426000.gbk
102616899*263705320155Island text1.5083233.105943.0981Neighbours31BLASTN+2616899.gbk
112649759*267211722359Island text1.5270137.325739.1156Neighbours31BLASTN+2649759.gbk
123911153*393354622394Island text1.5751631.579246.6204Neighbours31BLASTN3911153.gbk