Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002163: Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome

NCBI: NC_002163

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain (originally 5636/77) was isolated from a diarrheic patient in 1977 and minimally passaged. This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129726*5531925594Island text2.161317.670331.1554Neighbours21BLASTN29726.gbk
212980014868418885Island text1.596213.056328.688Neighbours21BLASTN+129800.gbk
3388595*40968321089Island text2.1929717.862426.946Neighbours21BLASTN+388595.gbk
4687925*71274724823Island text2.3446118.428629.1392Neighbours21BLASTN+687925.gbk
51354215137844524231Island text1.5780814.006720.2331Neighbours21BLASTN1354215.gbk
61471517151453443018Island text1.611114.719125.0309Neighbours21BLASTN+1471517.gbk
71607360*163467927320Island text1.7687416.630529.5986Neighbours21BLASTN1607360.gbk