n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)
n0_4mer:D = Distance between local and global OU patterns
n0_4mer:PS = Distance between 2 strands of same DNA molecule
Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS
NC_001732: Methanocaldococcus jannaschii DSM 2661 extrachromosomal, complete
NCBI: NC_001732
Host Lineage: Methanocaldococcus jannaschii; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea
General Information: Methane-producing thermophilic archeon. This organism is an obligately anaerobic methane-producing archeon and was the first representative of the archaeal domain to be completely sequenced. It was isolated in 1982 from a deep-sea hydrothermal vent. The cells require a pH of 5.2-7 with 1.0-5.0% NaCl, optimal conditions are pH 6.0 and 3% NaCl. M. jannaschii fixes carbon dioxide to methane as its primary energy-producing biochemical pathway.