Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_000918: Aquifex aeolicus VF5, complete genome

NCBI: NC_000918

Host Lineage: Aquifex aeolicus; Aquifex; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: This hyperthermophilic organism grows optimally at 95 C on hydrogen, oxygen, carbon dioxide, and mineral salts. Many of the enzymes this organism produces are studied due to their heat stable nauture.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1826118261Island text1.8715427.66949.0681Neighbours367BLASTN1.gbk
235564*6036624803Island text1.4487323.62642.9102Neighbours367BLASTN+35564.gbk
324679227030423513Island text2.8858323.356425.6127Neighbours21BLASTNIslandViewer 246792.gbk
433623235491918688Island text1.6646121.853713.3147Neighbours21BLASTN336232.gbk
5465627*49126925643Island text1.4568124.288739.7003Neighbours367BLASTN465627.gbk
6707801*73055422754Island text1.4378822.53167.89987Neighbours367BLASTN+707801.gbk
71353310*137958226273Island text1.6941325.885944.2706Neighbours367BLASTN1353310.gbk