Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_000916: Methanothermobacter thermautotrophicus str. Delta H, complete

NCBI: NC_000916

Host Lineage: Methanothermobacter thermautotrophicus; Methanothermobacter; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: This strain was isolated from sewage sludge in 1971 in Urbana, Illinois, USA. This organism is a strictly anaerobic, nonmotile, methane producing archeon. This organism is found in thermophilic, anaerobic sewage sludge digestors. Energy metabolism is by the reduction of carbon dioxide to methane.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1809918099Island text1.8977232.262354.3732Neighbours328BLASTN1.gbk
2314597116539707Island text2.0390238.599336.73Neighbours328BLASTN+IslandViewer 31459.gbk
3191561*21421022650Island text1.4260829.578152.1623Neighbours328BLASTN191561.gbk
425100027672025721Island text1.8991934.219831.2017Neighbours328BLASTNIslandViewer 251000.gbk
5629245*65796028716Island text2.1060142.023743.0031Neighbours328BLASTN629245.gbk
682661484859921986Island text1.5650231.032621.0348Neighbours328BLASTN+826614.gbk
7952663*97109918437Island text1.5365728.328753.3195Neighbours328BLASTN952663.gbk
8983500100821224713Island text1.646137.779129.6519Neighbours328983500.gbk
91417981143620618226Island text1.5476528.468551.1207Neighbours328BLASTN1417981.gbk