Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_000911: Synechocystis sp. PCC 6803, complete genome

NCBI: NC_000911

Host Lineage: Synechocystis; Synechocystis; ; Chroococcales; Cyanobacteria; Bacteria

General Information: This cyanobacterium was isolated from a freshwater lake in 1968 and is easily transformed by exogenous DNA. The photosynthetic apparatus is very similar to the one found in plants. This organism also exhibits phototactic movement.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1159374236326427Island text2.0317631.45820.411Neighbours21BLASTN+ PAI DB15937.gbk
29632511953223208Island text1.7290426.332119.9887Neighbours311BLASTN96325.gbk
3240863*26409923237Island text1.5302227.36512.5594Neighbours311BLASTN240863.gbk
435226339172939467Island text2.700836.334619.8903Neighbours21BLASTN+IslandViewer 352263.gbk
51191445121962428180Island text1.9456729.559116.5634Neighbours311BLASTN+IslandViewer 1191445.gbk
61284552*130934824797Island text1.6685630.066321.5272Neighbours311BLASTN1284552.gbk
71358846138189023045Island text1.5229526.942922.6459Neighbours21BLASTN+1358846.gbk
81611500*164476733268Island text2.3419632.502226.5153Neighbours21BLASTN+IslandViewer 1611500.gbk
91718820*174237523556Island text1.8477729.17419.0168Neighbours311BLASTN+IslandViewer 1718820.gbk
101957758*198019322436Island text1.4677825.875528.5053Neighbours311BLASTN+IslandViewer 1957758.gbk
112043938*206580821871Island text1.4979225.139828.3591Neighbours311BLASTN+IslandViewer 2043938.gbk
122511514*253409922586Island text1.4314224.890617.9498Neighbours311BLASTN+2511514.gbk
132747604277063323030Island text1.6128728.039916.9311Neighbours311IslandViewer 2747604.gbk
142777447*280458427138Island text1.8488129.326518.9563Neighbours311BLASTN+2777447.gbk
153075896310969533800Island text1.581828.493623.6336Neighbours21BLASTN+IslandViewer 3075896.gbk
163436529346125024722Island text1.7503829.599120.7507Neighbours3113436529.gbk
173478000349877120772Island text1.6601927.51316.4992Neighbours311BLASTN3478000.gbk