n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)
n0_4mer:D = Distance between local and global OU patterns
n0_4mer:PS = Distance between 2 strands of same DNA molecule
Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS
NC_000868: Pyrococcus abyssi GE5, complete genome
NCBI: NC_000868
Host Lineage: Pyrococcus abyssi; Pyrococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea
General Information: This organism was isolated from an active chimney in the North Fiji Basin of the Pacific Ocean at a depth of 3500 meters. This organism is an obligate anaerobic, hyperthermophilic archaeon. Growth occurs at a temperature of 67-103 degrees C with optimal growth at 103 degrees C at 200 atmospheres of pressure. Increased hydrostatic pressure has been found to extend the upper growth temperature and stimulate growth.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!