Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_000853: Thermotoga maritima MSB8, complete genome

NCBI: NC_000853

Host Lineage: Thermotoga maritima; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Rod-shaped thermophilic marine bacterium that metabolizes many simple and complex carbohydrates including glucose, sucrose, starch, cellulose, and xylan. This hyperthermophilic organism was originally isolated from a geothermal marine area near Vulcano, Italy. Thermotoga maritima is a hyperthermophile with an optimum growth temperature of 80 degrees C. This organism, a member of the Thermotogales, has the characteristic sheath-like envelope which extends beyond the cell wall. These organisms are heterotrophs are able to use a wide range of carbohydrates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156957659272823153Island text1.4497426.14342.0697Neighbours317BLASTN+569576.gbk
264807567630528231Island text2.0680333.860220.6542Neighbours317BLASTNIslandViewer 648075.gbk
3771746*79860126856Island text1.4859724.951432.8176Neighbours317BLASTN+771746.gbk
496024897962819381Island text1.5956423.828634.316Neighbours317BLASTN+IslandViewer 960248.gbk
51071078*109690625829Island text1.3658626.641540.4191Neighbours317BLASTN+1071078.gbk
61480478*151159431117Island text2.0184626.076346.0316Neighbours317BLASTN1480478.gbk