Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




CP002207: Bacillus atrophaeus 1942, complete genome

NCBI: CP002207

Host Lineage: Bacillus atrophaeus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus atrophaeus is a soil-dwelling, gram-positive, non-pathogenic, aerobic spore-forming bacillus related to B. subtilis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113466634666Island text2.0214229.426920.7889Neighbours21BLASTN1.gbk
2193080*21757824499Island text2.7554832.405219.1268Neighbours21BLASTN+193080.gbk
322711824730620189Island text1.5215532.845942.7244Neighbours31BLASTN+227118.gbk
4725577*74890723331Island text1.7649729.736118.1959Neighbours21BLASTN725577.gbk
51358597140857849982Island text2.1179830.596719.0629Neighbours21BLASTN+1358597.gbk
61538782160818669405Island text3.0910830.211122.7887Neighbours21BLASTN+1538782.gbk
71620700164659925900Island text2.5242330.191426.8147Neighbours21BLASTN+1620700.gbk
81894500191721322714Island text1.7907231.27637.8883Neighbours21BLASTN1894500.gbk
92169277219455125275Island text2.8572130.420411.1Neighbours21BLASTN+2169277.gbk
102452286*247572823443Island text2.006531.17717.5212Neighbours21BLASTN2452286.gbk
113520874354274221869Island text2.1560129.572222.5606Neighbours21BLASTN+3520874.gbk
123584000360809924100Island text2.7044831.089120.9818Neighbours21BLASTN+3584000.gbk
133850000387619026191Island text3.9606432.615813.6576Neighbours21BLASTN+3850000.gbk