Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:343402 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3434023457862385beta-glucosidase BglZQuickGO ontologyBLASTP
346288347229942hypothetical proteinBLASTP
3472373491411905hypothetical proteinBLASTP
349147349692546hypothetical proteinBLASTP
3497123509201209hypothetical proteinBLASTP
350913351305393hypothetical protein
351333352118786CRISPR-associated RAMP protein SSO1426 familyQuickGO ontologyBLASTP
352111352971861CRISPR-associated RAMP protein SSO1426 familyQuickGO ontologyBLASTP
352955353866912hypothetical proteinBLASTP
353900354520621hypothetical protein
3545523563571806CRISPR-associated protein TM1812 familyQuickGO ontologyBLASTP
356520357431912xylose isomerase domain-containing protein TIM barrelQuickGO ontologyBLASTP
357437358405969glycerate dehydrogenase HprAQuickGO ontologyBLASTP
3588743611292256thermostable beta-glucosidase BQuickGO ontologyBLASTP
361253361903651lysine exporter proteinQuickGO ontologyBLASTP
362133363002870UTP--glucose-1-phosphate uridylyltransferase GtaBQuickGO ontologyBLASTP
363058363675618negative regulator of genetic competenceQuickGO ontologyBLASTP