Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2193900 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
219390021953541455anthranilate synthase component 1QuickGO ontologyBLASTP
21953572195476120hypothetical protein
219588421985232640pyruvate phosphate dikinase PpdKQuickGO ontologyBLASTP
219880822001991392glycine--tRNA ligaseQuickGO ontologyBLASTP
22004692201041573guanylate kinase GmkQuickGO ontologyBLASTP
22010382201322285hypothetical proteinBLASTP
22013572202235879YicC-like proteinQuickGO ontologyBLASTP
22022902202661372chemotaxis protein CheYQuickGO ontologyBLASTP
22026582203431774ribosomal RNA small subunit methyltransferase EQuickGO ontologyBLASTP
22034162204372957ribosomal protein L11 methyltransferase PrmAQuickGO ontologyBLASTP
220436922055081140chaperone protein DnaJQuickGO ontologyBLASTP
220573322075921860chaperone protein DnaKQuickGO ontologyBLASTP
22076552208323669protein GrpEQuickGO ontologyBLASTP
220836722094191053heat-inducible transcription repressor HrcAQuickGO ontologyBLASTP
220999522111401146oxygen-independent coproporphyrinogen-III oxidase 1QuickGO ontologyBLASTP
221115022129611812elongation factor 4QuickGO ontologyBLASTP
22130412213184144hypothetical protein
221318122144521272SpoIVB peptidaseQuickGO ontologyBLASTP