Pre_GI Gene

Some Help

Host: NC_017214 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017214:379728 Bifidobacterium animalis subsp. lactis BB-12 chromosome, complete

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
379728380255528ATP synthase subunit BQuickGO ontologyBLASTP
380309380560252ATP synthase subunit CQuickGO ontologyBLASTP
380591381403813ATP synthase subunit AQuickGO ontologyBLASTP
3816953828341140Homoserine O-succinyltransferaseQuickGO ontologyBLASTP
3828443842741431Multidrug resistance protein BQuickGO ontologyBLASTP
384388385329942Inosine-uridine preferring nucleoside hydrolaseQuickGO ontologyBLASTP
3857653869101146hypothetical proteinBLASTP
386998387204207hypothetical proteinBLASTP
387239387730492hypothetical proteinBLASTP
387727388488762Cell division protein ftsK-like proteinQuickGO ontologyBLASTP
388485389402918Replication proteinQuickGO ontologyBLASTP
389386389613228hypothetical proteinBLASTP
3896333907511119hypothetical proteinBLASTP
3907513918631113Modification methylase EcoRIQuickGO ontologyBLASTP
3919203931401221DNA integrationrecombinationinversion proteinQuickGO ontologyBLASTP
3937443950751332Formyl-coenzyme A transferaseQuickGO ontologyBLASTP
3952633964201158mannan endo-14-beta-mannosidaseQuickGO ontologyBLASTP
396394396630237hypothetical proteinBLASTP
3972663984951230hypothetical proteinBLASTP
3984714002731803Oxalyl-CoA decarboxylaseQuickGO ontologyBLASTP
4004464021791734Chloride channel proteinQuickGO ontologyBLASTP
4023024077375436Collagen adhesion proteinQuickGO ontologyBLASTP
4076524097482097hypothetical proteinBLASTP
4097284122712544Alpha-amylase family proteinQuickGO ontologyBLASTP