Pre_GI Gene

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Host: NC_016944 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016944:1621575 Vibrio cholerae IEC224 chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
162157516227651191phage major capsid proteinQuickGO ontologyBLASTP
16228641623712849phage prohead protease HK97 family proteinQuickGO ontologyBLASTP
162367516250001326phage portal proteinQuickGO ontologyBLASTP
162501016267701761phage terminase large subunitQuickGO ontologyBLASTP
16267791626961183hypothetical protein
16269611627176216hypothetical protein
16272041627884681hypothetical protein
16278811628486606hypothetical protein
16284671628973507hypothetical proteinBLASTP
16293481629536189hypothetical protein
16297471630391645hypothetical proteinBLASTP
16304481630660213hypothetical protein
16307561630962207hypothetical protein
16315551631935381prophage Lp3 protein 12QuickGO ontologyBLASTP
16326781633115438hypothetical proteinBLASTP
16332431633530288hypothetical protein
16335671633737171hypothetical protein
16337561634019264hypothetical protein
16341171634953837hypothetical protein
16350471635634588hypothetical proteinBLASTP
16356541635923270hypothetical protein
16359201636117198hypothetical protein
16361281636721594deoxyribonucleoside kinaseQuickGO ontologyBLASTP
16367321636854123hypothetical protein
16368541637111258hypothetical protein
16371081637605498hypothetical protein
16375751638435861phage exonucleaseQuickGO ontologyBLASTP
16386291639060432hypothetical proteinBLASTP
163908516411392055DNA primasehelicaseQuickGO ontologyBLASTP
164113916427731635DNA primasehelicaseQuickGO ontologyBLASTP
16427861643145360hypothetical protein
16431461643733588hypothetical protein
16438751644414540hypothetical protein