Pre_GI Gene

Some Help

Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:89811 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8981190554744hypothetical protein
9080591002198hypothetical protein
9118691893708hypothetical proteinBLASTP
9229692967672hypothetical protein
93019946471629anaerobic ribonucleoside-triphosphate reductaseQuickGO ontologyBLASTP
9474695348603hypothetical protein
9671397396684von Willebrand factor type AQuickGO ontologyBLASTP
97398983991002hypothetical proteinBLASTP
9844099126687hypothetical protein
991301022763147hypothetical proteinBLASTP
102334103209876family 2 glycosyl transferaseQuickGO ontologyBLASTP
1032061044981293hypothetical proteinBLASTP
1044881056061119DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
1058751068881014hypothetical protein
106907107701795hypothetical protein
1078771089051029glyceraldehyde-3-phosphate dehydrogenase type IQuickGO ontologyBLASTP
109070109837768redoxin domain-containing proteinQuickGO ontologyBLASTP
109865110419555hypothetical protein
1104291116041176dihydroorotate oxidaseQuickGO ontologyBLASTP
1117261130991374peptidase M20QuickGO ontologyBLASTP
113109113798690silent information regulator protein Sir2QuickGO ontologyBLASTP