Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:155236 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1552361566811446anthranilate synthaseQuickGO ontologyBLASTP
1566831582781596bifunctional glutamine amidotransferaseanthranilate phosphoribosyltransferaseQuickGO ontologyBLASTP
158399159337939hypothetical proteinBLASTP
1597911643294539CRISPR-associated protein Csn1 familyQuickGO ontologyBLASTP
164326165222897CRISPR-associated protein Cas1QuickGO ontologyBLASTP
165224165559336CRISPR-associated protein Cas2QuickGO ontologyBLASTP
168481169341861nitrite and sulfite reductase 4Fe-4S regionQuickGO ontologyBLASTP
1693851711481764adenylylsulfate reductase subunit alphaQuickGO ontologyBLASTP
1711321714463154Fe-4S ferredoxinQuickGO ontologyBLASTP
171457172356900sulfate adenylyltransferase subunit 2QuickGO ontologyBLASTP
1723561740411686sulfate adenylyltransferase large subunitQuickGO ontologyBLASTP
1742631752821020hypothetical protein
1753951764141020sulfate ABC transporter periplasmic sulfate-binding proteinQuickGO ontologyBLASTP
176570177403834sulfate ABC transporter inner membrane subunit CysTQuickGO ontologyBLASTP
177403178224822sulfate ABC transporter inner membrane subunit CysWQuickGO ontologyBLASTP