Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1255359 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
125535912570051647Tfp pilus assembly protein pilus retraction ATPase PilT-like proteinQuickGO ontologyBLASTP
12570021257805804ABC transporter ATPaseQuickGO ontologyBLASTP
12577921258703912ABC transporterQuickGO ontologyBLASTP
12587241259041318hypothetical protein
12592701259794525hypothetical proteinBLASTP
12599461260701756geranylgeranylglyceryl phosphate synthaseQuickGO ontologyBLASTP
126094812626961749hypothetical proteinBLASTP
12627061263536831hypothetical proteinBLASTP
126383612655031668hypothetical proteinBLASTP
126552212672131692hypothetical proteinBLASTP
12672221268055834hypothetical proteinBLASTP
126837212701201749hypothetical proteinBLASTP
12701301270960831hypothetical proteinBLASTP
127116212721871026GSCFA domain-containing proteinQuickGO ontologyBLASTP
127234112742901950hypothetical proteinBLASTP
12743051275135831hypothetical proteinBLASTP
127544912769091461DEADDEAH box helicaseQuickGO ontologyBLASTP
127695412781111158diguanylate cyclaseQuickGO ontologyBLASTP