Pre_GI Gene

Some Help

Host: NC_012808 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012808:420334 Methylobacterium extorquens AM1, complete genome

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
420334420969636putative cyclic nucleotide-binding domainQuickGO ontologyBLASTP
420973421392420hypothetical proteinBLASTP
421630421803174hypothetical proteinBLASTP
421963422076114hypothetical protein
422230422517288hypothetical proteinBLASTP
4231704242191050ABC transporter periplasmic protein putative sulfatethiosulfate transporterQuickGO ontologyBLASTP
424224425078855ABC transporter permease putative sulfatethiosulfate transporterQuickGO ontologyBLASTP
425119425973855ABC transporter permease putative sulfatethiosulfate transporterQuickGO ontologyBLASTP
4259784270211044ABC transporter ATPase putative sulfatethiosulfate transporterQuickGO ontologyBLASTP
42867642877095ribosomal RNA 5SQuickGO ontologyBLASTP
43207343214876tRNA-AlaQuickGO ontologyBLASTP
434567435037471hypothetical proteinBLASTP
435220435921702endonuclease III DNA glycosylaseapyrimidinic AP lyaseQuickGO ontologyBLASTP
436145436909765phosphoribosylaminoimidazole-succinocarboxamide synthetase SAICAR synthetaseQuickGO ontologyBLASTP
4369164385711656hypothetical proteinBLASTP
4385684403821815putative glycosyl transferaseQuickGO ontologyBLASTP
440668441159492hypothetical proteinBLASTP
441219441761543hypothetical proteinBLASTP
441998442417420hypothetical proteinBLASTP
442504443229726putative metal-dependent hydrolaseQuickGO ontologyBLASTP
4433254445691245intracellular PHB depolymeraseQuickGO ontologyBLASTP
4447154461091395two component sensor histidine kinase RegSQuickGO ontologyBLASTP