Pre_GI Gene

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Host: NC_012686 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012686:641870 Chlamydia trachomatis B/Jali20/OT chromosome, complete genome

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Chlamydia trachomatis B/Jali20/OT is a clinical strain isolated from the conjunctiva in an active case of trachoma. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. Chlamydia trachomatis causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6418706430451176general secretion pathway protein FQuickGO ontologyBLASTP
6430576445621506general secretion pathway protein EQuickGO ontologyBLASTP
6445466468282283general secretion pathway protein DQuickGO ontologyBLASTP
6468296480581230hypothetical proteinBLASTP
6481866492561071proline dipeptidaseQuickGO ontologyBLASTP
6492676509971731DNA mismatch repair proteinQuickGO ontologyBLASTP
651292651990699type III secretion chaperone low calcium response protein HQuickGO ontologyBLASTP
652007652366360hypothetical proteinBLASTP
6524036538661464putative type III secretion system membrane proteinQuickGO ontologyBLASTP
6538976552161320putative type III secretion system proteinQuickGO ontologyBLASTP
655294656277984putative integral membrane proteinQuickGO ontologyBLASTP
6565826584891908threonyl-tRNA synthetaseQuickGO ontologyBLASTP
658940659707768Chromosome partitioning ATPase ParA familyQuickGO ontologyBLASTP
659712660503792virulence plasmid protein pGP6-D-related proteinQuickGO ontologyBLASTP
660469661020552hypothetical proteinBLASTP
6612196622591041tryptophanyl-tRNA synthetaseQuickGO ontologyBLASTP
6622846642902007excinuclease ABC subunit BQuickGO ontologyBLASTP