Pre_GI Gene

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Host: NC_012686 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012686:586714 Chlamydia trachomatis B/Jali20/OT chromosome, complete genome

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Chlamydia trachomatis B/Jali20/OT is a clinical strain isolated from the conjunctiva in an active case of trachoma. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. Chlamydia trachomatis causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
58671458713942650S ribosomal protein L17QuickGO ontologyBLASTP
5871485882811134DNA-directed RNA polymerase subunit alphaQuickGO ontologyBLASTP
58830258870039930S ribosomal protein S11QuickGO ontologyBLASTP
58872258909036930S ribosomal protein S13QuickGO ontologyBLASTP
5891465905191374preprotein translocase subunit SecYQuickGO ontologyBLASTP
59054259097643550S ribosomal protein L15QuickGO ontologyBLASTP
59096959146649830S ribosomal protein S5QuickGO ontologyBLASTP
59148159185237250S ribosomal protein L18QuickGO ontologyBLASTP
59187459242555250S ribosomal protein L6QuickGO ontologyBLASTP
59245359285440230S ribosomal protein S8QuickGO ontologyBLASTP
59287259341454350S ribosomal protein L5QuickGO ontologyBLASTP
59341659375133650S ribosomal protein L24QuickGO ontologyBLASTP
59376459413236950S ribosomal protein L14QuickGO ontologyBLASTP
59414959440025230S ribosomal protein S17QuickGO ontologyBLASTP
59439359461121950S ribosomal protein L29QuickGO ontologyBLASTP
59461359502941750S ribosomal protein L16QuickGO ontologyBLASTP
59506259573667530S ribosomal protein S3QuickGO ontologyBLASTP
59574659608133650S ribosomal protein L22QuickGO ontologyBLASTP
59610059636626730S ribosomal protein S19QuickGO ontologyBLASTP
59637259722685550S ribosomal protein L2QuickGO ontologyBLASTP
59725059758533650S ribosomal protein L23QuickGO ontologyBLASTP
59760159826966950S ribosomal protein L4QuickGO ontologyBLASTP
59827859894366650S ribosomal protein L3QuickGO ontologyBLASTP
599378600274897hypothetical proteinBLASTP
600440601390951methionyl-tRNA formyltransferaseQuickGO ontologyBLASTP
601380602222843UDP-N-acetylglucosamine acyltransferaseQuickGO ontologyBLASTP
6022346026954623R-hydroxymyristoyl-ACP dehydrataseQuickGO ontologyBLASTP
602692603552861UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylaseQuickGO ontologyBLASTP
6036536052811629apolipoprotein N-acyltransferaseQuickGO ontologyBLASTP
605345605827483acyl-CoA hydrolaseQuickGO ontologyBLASTP
605963606715753DNA polymerase III subunit epsilonQuickGO ontologyBLASTP