Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1802535 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1802535180400114674-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP
18055611806001441homoprotocatechuate degradative operon repressorQuickGO ontologyBLASTP
1806219180778115634-hydroxyphenylacetate 3-monooxygenaseQuickGO ontologyBLASTP
180779918083115134-hydroxyphenylacetate 3-monooxygenase coupling proteinQuickGO ontologyBLASTP
18086441809054411hypothetical proteinBLASTP
18091901809870681transcriptional regulatory protein YedWQuickGO ontologyBLASTP
180986318112271365histidine kinaseQuickGO ontologyBLASTP
18129781813088111hypothetical proteinBLASTP
18130891813259171hypothetical proteinBLASTP
181359218152771686cell invasion proteinQuickGO ontologyBLASTP
18152941815635342cell invasion proteinQuickGO ontologyBLASTP
18156451815965321inner membrane proteinQuickGO ontologyBLASTP
18161831817058876hypothetical proteinBLASTP
18172811817961681hypothetical proteinBLASTP
1818101181818585tRNA-SerQuickGO ontologyBLASTP
18185801819239660hypothetical proteinBLASTP
18193261819655330sulfur transfer protein TusEQuickGO ontologyBLASTP
18196521819933282acylphosphataseQuickGO ontologyBLASTP
18199821820761780araC family transcriptional regulatorQuickGO ontologyBLASTP
182154918227601212hypothetical proteinBLASTP
18228181823135318heat shock protein HspQQuickGO ontologyBLASTP
18231801823593414hypothetical proteinBLASTP
18237671824429663hypothetical proteinBLASTP
18245241824982459methylglyoxal synthaseQuickGO ontologyBLASTP
182501818270722055DNA helicase IVQuickGO ontologyBLASTP