Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1573470 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
15734701574450981vtamin B12-transporter permeaseQuickGO ontologyBLASTP
15746531574952300integration host factor subunit alphaQuickGO ontologyBLASTP
157495715773442388phenylalanyl-tRNA synthetase subunit betaQuickGO ontologyBLASTP
15773601578343984phenylalanyl-tRNA synthetase subunit alphaQuickGO ontologyBLASTP
1578645157900135750S ribosomal protein L20QuickGO ontologyBLASTP
1579121157929117150S ribosomal protein AQuickGO ontologyBLASTP
15793451579779435translation initiation factor IF-3QuickGO ontologyBLASTP
157989115818191929threonyl-tRNA synthetaseQuickGO ontologyBLASTP
158271115839341224O-antigen polymeraseQuickGO ontologyBLASTP
15842571584463207hypothetical proteinBLASTP
15846361585490855DNARNA non-specific endonucleaseQuickGO ontologyBLASTP
15854871585801315hypothetical proteinBLASTP
15859711586903933outer membrane proteinQuickGO ontologyBLASTP
15869521587710759outer membrane proteinQuickGO ontologyBLASTP
158799915889319336-phosphofructokinaseQuickGO ontologyBLASTP
15890281589318291hypothetical proteinBLASTP
15894251590285861hypothetical proteinBLASTP
15903281590864537hypothetical proteinBLASTP
159101315916816692-deoxyglucose-6-phosphataseQuickGO ontologyBLASTP