Pre_GI Gene

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Host: NC_011083 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011083:1476894 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a multidrug resistant strain. Salmonella enterica subsp. enterica serovar Heidelberg is one of the more common serovars causing disease in the USA. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
147689414786421749sensor-kinaseQuickGO ontologyBLASTP
14785991479237639response regulatorQuickGO ontologyBLASTP
14793351479547213hypothetical proteinBLASTP
14796431480602960putative pathogenicity island proteinQuickGO ontologyBLASTP
14807751481503729transcriptional regulator MerR family proteinQuickGO ontologyBLASTP
14816821482320639EsrBQuickGO ontologyBLASTP
148235114851132763secretion system regulatorSensor componentQuickGO ontologyBLASTP
148591714874101494type III secretion outer membrane pore YscCHrcC familyQuickGO ontologyBLASTP
148740314886021200type III secretion apparatus protein YscDHrpQ familyQuickGO ontologyBLASTP
14886101488852243type III secretion system protein YseE familyQuickGO ontologyBLASTP
14894491490039591secretion system effector SseBQuickGO ontologyBLASTP
14899941490509516type III secretion low calcium response chaperone LcrHSycDQuickGO ontologyBLASTP
149051214919661455translocation machinery componentQuickGO ontologyBLASTP
14920661492569504translocation machinery componentQuickGO ontologyBLASTP
14925721492988417secreted effector proteinQuickGO ontologyBLASTP
14930461493474429type III secretion low calcium response chaperone LcrHSycDQuickGO ontologyBLASTP
14934901494272783secreted effector proteinQuickGO ontologyBLASTP
14943711494958588secretion system effector SseGQuickGO ontologyBLASTP
14950521495267216type III secretion apparatus needle proteinQuickGO ontologyBLASTP
14952451495535291type III secretion system protein SsaH familyQuickGO ontologyBLASTP
14955321495795264type III secretion system apparatus proteinQuickGO ontologyBLASTP
14957921496541750type III secretion apparatus lipoprotein YscJHrcJ familyQuickGO ontologyBLASTP
14965591497107549putative cytoplasmic proteinQuickGO ontologyBLASTP
14971041497778675type III secretion apparatus protein HrpEYscL familyQuickGO ontologyBLASTP
14977951498760966secretion system apparatus protein SsaLQuickGO ontologyBLASTP
14988181499186369secretion system apparatus protein SsaMQuickGO ontologyBLASTP
149917115012162046secretion system apparatus protein SsaVQuickGO ontologyBLASTP
150120615025071302type III secretion apparatus H-transporting two-sector ATPaseQuickGO ontologyBLASTP